Python software modules
Python and related software.
| Name | Supported Versions | Module(s) | https://hpc.tue.nl |
|---|---|---|---|
| AlphaFold | 2.3.1-foss-2022a | ml avail AlphFold | |
| Cantera | 3.0.0-foss-2023a2.6.0-foss-2022a | ml avail Cantera | |
| CuPy | 13.0.0-foss-2023a-CUDA-12.1.1 | ml avail CuPy. | |
| IPython | 8.14.08.5.0 | ml avail IPython | |
| Jax | 0.4.25-gfbf-2023a0.4.25-gfbf-2023a-CUDA-12.1.1 | ml avail jax | |
| JupyterLab | 4.0.5-GCCcore-12.3.03.5.0-GCCcore-11.3.0 | ml avail Jupyter | Yes |
| MLflow | MLflow/2.10.2-gfbf-2023a | ml avail MLflow | Yes |
| numba | 0.58.1-foss-2023a0.56.4-foss-2022a | ml avail numba | |
| OpenCV | 4.8.1-foss-2023a-contrib4.8.1-foss-2023a-CUDA-12.1.1-contrib | ml avail OpenCV | |
| OpenFold | 1.0.1-foss-2022a-CUDA-11.7.0 | ml av OpenFold | |
| OpenMM | 8.0.0-foss-2023a8.0.0-foss-2023a-CUDA-12.1.1 | ml avail OpenMM | |
| petc4py | 3.20.3-foss-2023a3.17.4-foss-2022a | ml avail petsc4py | |
| Python | 3.12.3-GCCcore-13.3.03.11.3-GCCcore-12.3.03.10.13-GCCcore-11.3.03.10.4-GCCcore-11.3.0 | ml avail Python/ | |
| PyTorch | 2.1.2-foss-2023a2.1.2-foss-2023a-CUDA-12.1.1 | ml avail PyTorch | Yes |
| PyTorch-Lightning | 2.2.1-foss-2023a2.2.1-foss-2023a--CUDA-12.1.11.8.4-foss-2022a1.8.4-foss-2022a-CUDA-11.7.0 | ml avail PyTorch | |
| RHEIA | 1.1.11-foss-2023a | ml avail RHEIA | |
| scikit-bio | 0.6.0-foss-2023a0.5.7-foss-2022a | ml avail scikit-bio | |
| scikit-learn | 1.4.2-gfbf-2023a1.1.2-foss-2022a | ml avail scikit-learn | |
| scikit-image | 0.22.0-foss-2023a0.19.3-foss-2022a | ml avail scikit-image | |
| SciPy | 2023.07-gfbf-2023a2022.05-foss-2022a | ml avail SciPy-bundle | Yes |
| slepc4py | 3.20.2-foss-2023a3.17.2-foss-2022a | ml avail slepc4py | |
| Transformers | 4.39.3-gfbf-2023a | ml avail Transformers | |
| Tensorflow | 2.15.1-foss-2023a2.15.1-foss-2023a-CUDA-12.1.12.11.0-foss-2022a2.11.0-foss-2022a-CUDA-11.7.0 | ml avail TensorFlow | Yes |
| torchvision | 0.16.0-foss-2023a0.16.0-foss-2023a-CUDA-12.1.10.13.1-foss-2022a0.13.1-foss-2022a-CUDA-11.7.0 | ml avail torchvision | Yes |
available pip packages after running module load SciPy-bundle/2023.07-gfbf-2023a
$ mdule load SciPy-bundle/2023.07-gfbf-2023a
$ pip list
Package Version
--------------------------------- -----------
alabaster 0.7.13
appdirs 1.4.4
asn1crypto 1.5.1
atomicwrites 1.4.1
attrs 23.1.0
Babel 2.12.1
backports.entry-points-selectable 1.2.0
backports.functools-lru-cache 1.6.5
beniget 0.4.1
bitstring 4.0.2
blist 1.3.6
Bottleneck 1.3.7
CacheControl 0.12.14
cachy 0.3.0
certifi 2023.5.7
cffi 1.15.1
chardet 5.1.0
charset-normalizer 3.1.0
cleo 2.0.1
click 8.1.3
cloudpickle 2.2.1
colorama 0.4.6
commonmark 0.9.1
crashtest 0.4.1
cryptography 41.0.1
Cython 0.29.35
deap 1.4.0
decorator 5.1.1
distlib 0.3.6
distro 1.8.0
docopt 0.6.2
docutils 0.20.1
doit 0.36.0
dulwich 0.21.5
ecdsa 0.18.0
editables 0.3
exceptiongroup 1.1.1
execnet 1.9.0
filelock 3.12.2
flit_core 3.9.0
fsspec 2023.6.0
future 0.18.3
gast 0.5.4
glob2 0.7
html5lib 1.1
idna 3.4
imagesize 1.4.1
importlib-metadata 6.7.0
importlib-resources 5.12.0
iniconfig 2.0.0
intervaltree 3.1.0
intreehooks 1.0
ipaddress 1.0.23
jaraco.classes 3.2.3
jeepney 0.8.0
Jinja2 3.1.2
joblib 1.2.0
jsonschema 4.17.3
keyring 23.13.1
keyrings.alt 4.2.0
liac-arff 2.5.0
lockfile 0.12.2
markdown-it-py 3.0.0
MarkupSafe 2.1.3
mdurl 0.1.2
mock 5.0.2
more-itertools 9.1.0
mpmath 1.3.0
msgpack 1.0.5
netaddr 0.8.0
netifaces 0.11.0
numexpr 2.8.4
numpy 1.25.1
packaging 23.1
pandas 2.0.3
pastel 0.2.1
pathlib2 2.3.7.post1
pathspec 0.11.1
pbr 5.11.1
pexpect 4.8.0
pip 23.1.2
pkginfo 1.9.6
platformdirs 3.8.0
pluggy 1.2.0
ply 3.11
pooch 1.7.0
psutil 5.9.5
ptyprocess 0.7.0
py 1.11.0
py-expression-eval 0.3.14
pyasn1 0.5.0
pybind11 2.11.1
pycparser 2.21
pycryptodome 3.18.0
pydevtool 0.3.0
Pygments 2.15.1
pylev 1.4.0
PyNaCl 1.5.0
pyparsing 3.1.0
pyrsistent 0.19.3
pytest 7.4.0
pytest-xdist 3.3.1
python-dateutil 2.8.2
pythran 0.13.1
pytoml 0.1.21
pytz 2023.3
rapidfuzz 2.15.1
regex 2023.6.3
requests 2.31.0
requests-toolbelt 1.0.0
rich 13.4.2
rich-click 1.6.1
scandir 1.10.0
scipy 1.11.1
SecretStorage 3.3.3
semantic-version 2.10.0
setuptools 67.7.2
shellingham 1.5.0.post1
simplegeneric 0.8.1
simplejson 3.19.1
six 1.16.0
snowballstemmer 2.2.0
sortedcontainers 2.4.0
Sphinx 7.0.1
sphinx-bootstrap-theme 0.8.1
sphinxcontrib-applehelp 1.0.4
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 2.0.1
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.5
sphinxcontrib-websupport 1.2.4
tabulate 0.9.0
threadpoolctl 3.1.0
toml 0.10.2
tomli 2.0.1
tomli_w 1.0.0
tomlkit 0.11.8
typing_extensions 4.6.3
tzdata 2023.3
ujson 5.8.0
urllib3 1.26.16
versioneer 0.29
virtualenv 20.23.1
wcwidth 0.2.6
webencodings 0.5.1
wheel 0.40.0
xlrd 2.0.1
zipfile36 0.1.3
zipp 3.15.0